An example on how to load BAM file and preview sequence information (in R Markdown). Source code for the R Markdown Notebook is available at a GitHub repository.
Manhattan plot for GWAS
Based on R Bioconductor Sushi package I created a step-by step guide of how to produce a Manhattan plot for a genom-wide associaction study (GWAS).
Mikolaj Buchwald Bioconductor 0 18 sec read